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1

Selection of unique Escherichia coli clones by random amplified polymorphic DNA (RAPD): Evaluation by whole genome sequencing

Nielsen, Karen L., Godfrey, Paul A., Stegger, Marc, Andersen, Paal S., Feldgarden, Michael, Frimodt-Møller, Niels

Journal:

Journal of Microbiological Methods

Year:

2014

Language:

english

File:

PDF, 512 KB

english, 2014

2

High Levels of Colicin Resistance in Escherichia coli

Michael Feldgarden and Margaret A. Riley

Journal:

Year:

1998

Language:

english

File:

PDF, 993 KB

english, 1998

3

Genomic epidemiology of the Escherichia coli O104:H4 outbreaks in Europe, 2011

Grad, Y. H., Lipsitch, M., Feldgarden, M., Arachchi, H. M., Cerqueira, G. C., FitzGerald, M., Godfrey, P., Haas, B. J., Murphy, C. I., Russ, C., Sykes, S., Walker, B. J., Wortman, J. R., Young, S., Ze

Journal:

Proceedings of the National Academy of Sciences

Year:

2012

Language:

english

File:

PDF, 290 KB

english, 2012

4

Haplotype Diversity in “Source-Sink” Dynamics ofEscherichia coliUrovirulence

Sujay Chattopadhyay, Michael Feldgarden, Scott J. Weissman, Daniel E. Dykhuizen, Gerald van Belle, Evgeni V. Sokurenko

Journal:

Journal of Molecular Evolution

Year:

2007

Language:

english

File:

PDF, 264 KB

english, 2007

5

Draft Genome Sequences of Staphylococcus aureus Sequence Type 34 (ST34) and ST42 Hybrids

Thomas, J. C., Godfrey, P. A., Feldgarden, M., Robinson, D. A.

Journal:

Journal of Bacteriology

Year:

2012

Language:

english

File:

PDF, 91 KB

english, 2012

6

Staphylococcal Enterotoxin P Predicts Bacteremia in Hospitalized Patients Colonized With Methicillin-Resistant Staphylococcus aureus

Calderwood, M. S., Desjardins, C. A., Sakoulas, G., Nicol, R., DuBois, A., Delaney, M. L., Kleinman, K., Cosimi, L. A., Feldgarden, M., Onderdonk, A. B., Birren, B. W., Platt, R., Huang, S. S.

Journal:

The Journal of Infectious Diseases

Year:

2014

Language:

english

File:

PDF, 449 KB

english, 2014

7

Chimeric 16S rRNA sequence formation and detection in Sanger and 454-pyrosequenced PCR amplicons

Haas, B. J., Gevers, D., Earl, A. M., Feldgarden, M., Ward, D. V., Giannoukos, G., Ciulla, D., Tabbaa, D., Highlander, S. K., Sodergren, E., Methe, B., DeSantis, T. Z., Petrosino, J. F., Knight, R., B

Journal:

Genome Research

Year:

2011

Language:

english

File:

PDF, 903 KB

english, 2011

8

Can phage defence maintain colicin plasmids in Escherichia coli

Feldgarden, M., Golden, S., Wilson, H., Riley, M. A.

Journal:

Microbiology (Society for General Microbiology)

Year:

1995

Language:

english

File:

PDF, 1.12 MB

english, 1995

9

A Catalog of Reference Genomes from the Human Microbiome

Nelson, K. E., Weinstock, G. M., Highlander, S. K., Worley, K. C., Creasy, H. H., Wortman, J. R., Rusch, D. B., Mitreva, M., Sodergren, E., Chinwalla, A. T., Feldgarden, M., Gevers, D., Haas, B. J., M

Journal:

Year:

2010

Language:

english

File:

PDF, 1.41 MB

english, 2010

10

Rapid proliferation of historecognition alleles in populations of a colonial ascidian

Philip O. Yund, Michael Feldgarden

Journal:

Journal of Experimental Zoology Part A Ecological Genetics and Physiology

Year:

1992

Language:

english

File:

PDF, 1016 KB

english, 1992

11

Molecular complexity of successive bacterial epidemics deconvoluted by comparative pathogenomics

Beres, S. B., Carroll, R. K., Shea, P. R., Sitkiewicz, I., Martinez-Gutierrez, J. C., Low, D. E., McGeer, A., Willey, B. M., Green, K., Tyrrell, G. J., Goldman, T. D., Feldgarden, M., Birren, B. W., F

Journal:

Proceedings of the National Academy of Sciences

Year:

2010

Language:

english

File:

PDF, 816 KB

english, 2010

12

Validating the NCBI AMRFinder Tool and Resistance Gene Database Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of NARMS Isolates

Feldgarden, Michael, Brover, Vyacheslav, Haft, Daniel H., Prasad, Arjun B., Slotta, Douglas J., Tolstoy, Igor, Tyson, Gregory H., Zhao, Shaohua, Hsu, Chih-Hao, McDermott, Patrick F., Tadesse, Daniel A

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2019

Language:

english

File:

PDF, 1.67 MB

english, 2019

13

Genome sequencing of environmental Escherichia coli expands understanding of the ecology and speciation of the model bacterial species

Luo, C., Walk, S. T., Gordon, D. M., Feldgarden, M., Tiedje, J. M., Konstantinidis, K. T.

Journal:

Proceedings of the National Academy of Sciences

Year:

2011

Language:

english

File:

PDF, 673 KB

english, 2011

14

Allorecognition in Colonial Marine Invertebrates: Does Selection Favor Fusion with Kin or Fusion with Self?

Michael Feldgarden and Philip O. Yund

Journal:

Biological Bulletin

Year:

1992

Language:

english

File:

PDF, 221 KB

english, 1992

15

Size Doesn't Matter: Microbial Selection Experiments Address Ecological Phenomena

Michael Feldgarden, Daniel M. Stoebel, Dustin Brisson and Daniel E. Dykhuizen

Journal:

Year:

2003

Language:

english

File:

PDF, 1.76 MB

english, 2003

16

Integrating Susceptibility Data from Two Surveillance Programs with Unique Methodological Techniques: The Antibiogram Resistance Method or Isolate-Based Resistance Monitoring (ARMOR) Study Group

Epstein, Benjamin J., Gums, John G., Turner, Phillip J., Feldgarden, Michael, Hou, Wei

Journal:

Hospital Pharmacy

Year:

2007

Language:

english

File:

PDF, 221 KB

english, 2007

17

Erratum for Feldgarden et al., âValidating the AMRFinder Tool and Resistance Gene Database by Using Antimicrobial Resistance Genotype-Phenotype Correlations in a Collection of Isolatesâ

Feldgarden, Michael, Brover, Vyacheslav, Haft, Daniel H., Prasad, Arjun B., Slotta, Douglas J., Tolstoy, Igor, Tyson, Gregory H., Zhao, Shaohua, Hsu, Chih-Hao, McDermott, Patrick F., Tadesse, Daniel A

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2020

File:

PDF, 149 KB

2020

18

Genomics of Corynebacterium striatum, an emerging multi-drug resistant pathogen of immunocompromised patients

Nudel, Kathleen, Zhao, Xiaomin, Basu, Sankha, Dong, Xiaoxi, Hoffmann, Maria, Feldgarden, Michael, Allard, Marc, Klompas, Michael, Bry, Lynn

Journal:

Clinical Microbiology and Infection

Year:

2018

Language:

english

File:

PDF, 2.69 MB

english, 2018

19

Whole-genome Comparison of Urinary Pathogenic Escherichia coli and Faecal Isolates of UTI Patients and Healthy Controls

Nielsen, Karen Leth, Stegger, Marc, Kiil, Kristoffer, Godfrey, Paul A., Feldgarden, Michael, Lilje, Berit, Andersen, Paal S., Frimodt-Møller, Niels

Journal:

International Journal of Medical Microbiology

Year:

2017

Language:

english

File:

PDF, 1.22 MB

english, 2017

20

Enzyme-Mediated Resistance to Antibiotics: Mechanisms, Dissemination, and Prospects for Inhibition.Edited by Robert A. Bonomo and Marcelo Tolmasky

Review by: Reviewed by Michael Feldgarden

Journal:

Quarterly Review of Biology

Year:

2008

Language:

english

File:

PDF, 275 KB

english, 2008

21

SIZE DOESN'T MATTER: MICROBIAL SELECTION EXPERIMENTS ADDRESS ECOLOGICAL PHENOMENA

Feldgarden, Michael, Stoebel, Daniel M., Brisson, Dustin, Dykhuizen, Daniel E.

Journal:

Year:

2003

Language:

english

File:

PDF, 99 KB

english, 2003

22

NEW DEVELOPMENTS IN TAX ADMINISTRATION and PERSION PLANS || SELF-EMPLOYED RETIREMENT PLANS

ROBERT FELDGARDEN

Journal:

National Tax Journal

Year:

1974

Language:

english

File:

PDF, 673 KB

english, 1974

23

Candidate Targets of Balancing Selection in the Genome of Staphylococcus aureus

Thomas, J. C., Godfrey, P. A., Feldgarden, M., Robinson, D. A.

Journal:

Molecular Biology and Evolution

Year:

2012

Language:

english

File:

PDF, 326 KB

english, 2012

24

Comment on: Resistance gene naming and numbering: is it a new gene or not?

Jacoby, George A., Bonomo, Robert A., Bradford, Patricia A., Bush, Karen, Doi, Yohei, Feldgarden, Michael, Haft, Daniel, Klimke, William, Nordmann, Patrice, Palzkill, Timothy, Poirel, Laurent, Prasad,

Journal:

Journal of Antimicrobial Chemotherapy

Year:

2016

Language:

english

File:

PDF, 81 KB

english, 2016

25

HIGH LEVELS OF COLICIN RESISTANCE IN ESCHERICHIA COLI

Feldgarden, Michael, Riley, Margaret A.

Journal:

Year:

1998

Language:

english

File:

PDF, 1.07 MB

english, 1998

26

Adaptation of Escherichia coli traversing from the faecal environment to the urinary tract

Nielsen, Karen L., Stegger, Marc, Godfrey, Paul A., Feldgarden, Michael, Andersen, Paal S., Frimodt-Møller, Niels

Journal:

International Journal of Medical Microbiology

Year:

2016

Language:

english

File:

PDF, 1.24 MB

english, 2016

27

Identification of 50 Class D -Lactamases and 65 Acinetobacter-Derived Cephalosporinases in Acinetobacter spp.

Perichon, B., Goussard, S., Walewski, V., Krizova, L., Cerqueira, G., Murphy, C., Feldgarden, M., Wortman, J., Clermont, D., Nemec, A., Courvalin, P.

Journal:

Antimicrobial Agents and Chemotherapy

Year:

2014

Language:

english

File:

PDF, 3.40 MB

english, 2014

28

Environmental vs. Genetic Influence on the Intestinal Microbiome of Monozygotic and Dizygotic Twins

Joshua R. Korzenik, Christopher Smillie, Vikas Pabby, Francisco M. Camas, Diana M. Chien, Michael Feldgarden, Dirk Gevers, Doyle V. Ward, Athos Bousvaros, Curtis Huttenh, Bruce Birren, Eric Alm

Journal:

Gastroenterology

Year:

2011

Language:

english

File:

PDF, 113 KB

english, 2011

29

Gradual evolution in bacteria: evidence from Bacillus systematics

Journal:

Year:

2003

Language:

english

File:

PDF, 148 KB

english, 2003

30

Comparative Genomics of Enterococci: Variation in Enterococcus faecalis, Clade Structure in E. faecium, and Defining Characteristics of E. gallinarum and E. casseliflavus

Palmer, K. L., Godfrey, P., Griggs, A., Kos, V. N., Zucker, J., Desjardins, C., Cerqueira, G., Gevers, D., Walker, S., Wortman, J., Feldgarden, M., Haas, B., Birren, B., Gilmore, M. S.

Journal:

Year:

2012

Language:

english

File:

PDF, 5.62 MB

english, 2012

31

Whole-Genome Sequences of 94 Environmental Isolates of Bacillus cereus Sensu Lato

Van der Auwera, G. A., Feldgarden, M., Kolter, R., Mahillon, J.

Journal:

Genome Announcements

Year:

2013

Language:

english

File:

PDF, 168 KB

english, 2013

32

Evaluation of bacterial ribosomal RNA (rRNA) depletion methods for sequencing microbial community transcriptomes

Dawn Ciulla, Georgia Giannoukos, Ashlee Earl, Michael Feldgarden…

Journal:

Year:

2010

Language:

english

File:

PDF, 133 KB

english, 2010

33

High-Quality Draft Genome Sequences of 28 Enterococcus sp. Isolates

Palmer, K. L., Carniol, K., Manson, J. M., Heiman, D., Shea, T., Young, S., Zeng, Q., Gevers, D., Feldgarden, M., Birren, B., Gilmore, M. S.

Journal:

Journal of Bacteriology

Year:

2010

Language:

english

File:

PDF, 42 KB

english, 2010

34

The Genomic Diversification of the Whole Acinetobacter Genus: Origins, Mechanisms, and Consequences

Touchon, M., Cury, J., Yoon, E.-J., Krizova, L., Cerqueira, G. C., Murphy, C., Feldgarden, M., Wortman, J., Clermont, D., Lambert, T., Grillot-Courvalin, C., Nemec, A., Courvalin, P., Rocha, E. P. C.

Journal:

Genome Biology and Evolution

Year:

2014

Language:

english

File:

PDF, 1.54 MB

english, 2014

35

THE PHENOTYPIC AND FITNESS EFFECTS OF COLICIN RESISTANCE IN ESCHERICHIA COLI K-12

Feldgarden, Michael, Riley, Margaret A.

Journal:

Year:

1999

Language:

english

File:

PDF, 941 KB

english, 1999

36

Phylogenomic Classification and the Evolution of Clonal Complex 5 Methicillin-Resistant Staphylococcus aureus in the Western Hemisphere

Challagundla, Lavanya, Reyes, Jinnethe, Rafiqullah, Iftekhar, Sordelli, Daniel O., Echaniz-Aviles, Gabriela, Velazquez-Meza, Maria E., Castillo-Ramírez, Santiago, Fittipaldi, Nahuel, Feldgarden, Micha

Journal:

Frontiers in Microbiology

Year:

2018

Language:

english

File:

PDF, 1.45 MB

english, 2018

37

Comparative Genomics of Vancomycin-Resistant Staphylococcus aureus Strains and Their Positions within the Clade Most Commonly Associated with Methicillin-Resistant S. aureus Hospital-Acquired Infection in the United States

Kos, V. N., Desjardins, C. A., Griggs, A., Cerqueira, G., Van Tonder, A., Holden, M. T. G., Godfrey, P., Palmer, K. L., Bodi, K., Mongodin, E. F., Wortman, J., Feldgarden, M., Lawley, T., Gill, S. R.,

Journal:

Year:

2012

Language:

english

File:

PDF, 1.47 MB

english, 2012

38

Multi-institute analysis of carbapenem resistance reveals remarkable diversity, unexplained mechanisms, and limited clonal outbreaks

Cerqueira, Gustavo C., Earl, Ashlee M., Ernst, Christoph M., Grad, Yonatan H., Dekker, John P., Feldgarden, Michael, Chapman, Sinéad B., Reis-Cunha, João L., Shea, Terrance P., Young, Sarah, Zeng, Qia

Journal:

Proceedings of the National Academy of Sciences

Year:

2017

Language:

english

File:

PDF, 1.63 MB

english, 2017

39

To Thine Own Self be True? Yes! Thou Canst Not Then be False to Any Other. A Reply to Grosberg

Philip O. Yund and Michael Feldgarden

Journal:

Biological Bulletin

Year:

1992

Language:

english

File:

PDF, 147 KB

english, 1992

40

The Phenotypic and Fitness Effects of Colicin Resistance in Escherichia coli K-12

Michael Feldgarden and Margaret A. Riley

Journal:

Year:

1999

Language:

english

File:

PDF, 1.22 MB

english, 1999

41

Proposal for assignment of allele numbers for mobile colistin resistance (mcr) genes

Partridge, Sally R, Di Pilato, Vincenzo, Doi, Yohei, Feldgarden, Michael, Haft, Daniel H, Klimke, William, Kumar-Singh, Samir, Liu, Jian-Hua, Malhotra-Kumar, Surbhi, Prasad, Arjun, Rossolini, Gian Mar

Journal:

Journal of Antimicrobial Chemotherapy

Year:

2018

Language:

english

File:

PDF, 175 KB

english, 2018

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